PUBLICATIONS

Miraldo A, Iwaszkiewicz-Eggebrecht E, Buczek M, Goodsell R, Johansson H, Fisher BL, et al. Data of the Insect Biome Atlas: a metabarcoding survey of the terrestrial arthropods of Sweden and Madagascar. bioRxiv. Published online October 2024. https://doi.org/10.1101/2024.10.24.619818

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Sundh J, Granqvist E, Iwaszkiewicz-Eggebrecht E, Manoharan L, van Dik L, Goodsell R, Lukasik P, Miraldo A, Roslin T, et al.  HAPP: High-Accuracy Pipeline for Processing of deep metabarcoding data. Published online 2024. bioRxiv. https://doi.org/10.1101/2024.12.20.629441

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Iwaszkiewicz-Eggebrecht E, Goodsell RM, Bengsson BÅ,  Mutanen M, Klinth M, van Dijk L, Lukasik P, Miraldo A, et al. High-throughput biodiversity surveying sheds new light on the brightest of insect taxa. bioRxiv. Published online October 2024. https://doi.org/10.1101/2024.10.25.620209​

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van Dijk LJA, Miraldo, A, Raharinjanahary D, Rajoelison ET, Fisher BL, Goodsell RM, Iwaszkiewicz-Eggebrecht E, Åhlén D, Högvall J, Lundberg E, Rova E, Łukasik P, Ronquist F, Roslin T, Tack AJM. 2024. Biotic and abiotic drivers of ecosystem functioning differ between a temperate and a tropical region. bioRxiv. https://doi.org/10.1101/2024.02.28.582312

Goodsell R, Tack A, Ronquist F, van Dijk LVA, Iwaszkiewicz-Eggebrecht E, Miraldo A, Roslin T, Vanhatalo J. 2024. Moving towards better risk assessment for invertebrate conservation. EcoEvoRxiv. https://doi.org/10.32942/X23G71

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van Dijk LA, Fisher B, Miraldo A, Goodsell R, Iwaszkiewicz-Eggebrecht E, Raharinjanahary D, Rajoelison ET, Łukasik P, Andersson A, Ronquist F, Roslin T, Tack A. 2024. Temperature and water availability drive insect seasonality across temperate and tropical climates. Proceedings of the Royal Society B. 291: 20240090. https://doi.org/10.1098/rspb.2024.0090

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Iwaszkiewicz-Eggebrecht E, Zizka V, Lynggaard C, 2024. Three steps towards comparability and standardization among molecular methods for characterizing insect communities. Philos. Trans. R. Soc. B Biol. Sci. 379, 20230118. https://doi.org/10.1098/rstb.2023.0118​

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​Iwaszkiewicz-Eggebrecht E, Granqvist E, Buczek M, Prus M, Kudlicka J, Roslin T, Tack AJM, Andersson AF, Miraldo A, Ronquist F, Łukasik P, 2023. Optimizing insect metabarcoding using replicated mock communities. Methods Ecol. Evol. 14, 1130–1146. https://doi.org/10.1111/2041-210X.14073

Iwaszkiewicz-Eggebrecht E, Łukasik P, Buczek M, Deng J, Hartop EA, Havnås H, Prus-Frankowska M, Ugarph CR, Viteri P, Andersson AF, Roslin T, Tack AJM, Ronquist F, Miraldo A. 2023. FAVIS: Fast and versatile protocol for non-destructive metabarcoding of bulk insect samples. PLOS ONE 18, e0286272. https://doi.org/10.1371/journal.pone.0286272

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van Klink R, August T, Bas Y, Bodesheim P, Bonn A, Fossøy F, Høye TT, Jongejans E, Menz MHM, Miraldo A, Roslin T, Roy HE, Ruczyński I, Schigel D, Schäffler L, Sheard JK, Svenningsen C, Tschan GF, Wäldchen J, Zizka VMA, Åström J, Bowler DE. 2022. Emerging technologies revolutionise insect ecology and monitoring. Trends Ecol. Evol. 37, 872–885. https://doi.org/10.1016/j.tree.2022.06.001

 

Marquina D, Buczek M, Ronquist F, Łukasik P. 2021.The effect of ethanol concentration on the morphological and molecular preservation of insects for biodiversity studies. PeerJ. https://doi.org/10.7717/peerj.10799​

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Arribas P, Andújar C, Bidartondo MI, Bohmann K, Coissac É. et al. 2021. Connecting high‐throughput biodiversity inventories: Opportunities for a site‐based genomic framework for global integration and synthesis. Molecular Ecology, https://doi.org/10.1111/mec.15797 

IBA has developed several lab protocols for processing bulk insect samples to use in metabarcoding. We make all our protocols publicly available through the links below.

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FAVIS - https://www.protocols.io/view/favis-fast-and-versatile-protocol-for-metabarcodin-ce24tggw.html

Homogenization - https://www.protocols.io/view/sample-homogenization-and-dna-extraction-for-bulk-yxmvm31bbl3p/v1

Spike-ins - https://www.protocols.io/view/synthetic-coi-spike-ins-for-use-in-metabarcoding-b-14egn33ryl5d/v2

van Klink, R., Sheard, J.K., Høye, T.T., Roslin, T., Do Nascimento, L.A., Bauer, S., 2024. Towards a toolkit for global insect biodiversity monitoring. Philos. Trans. R. Soc. B Biol. Sci. 379, 20230101. https://doi.org/10.1098/rstb.2023.0101

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Karlsson D., Forshage M., Holston K. & Ronquist F. 2020. The data of the Swedish Malaise Trap Project, a countrywide inventory of Sweden's insect fauna. Biodiversity Data Journal, https://doi.org/10.3897/BDJ.8.e56286

 

Karlsson D., Hartop E., Forshage M., Jaschhof M. & Ronquist F. 2020. The Swedish Malaise trap project: a 15 year retrospective on a countrywide insect inventory. Biodiversity Data Journal, https://doi.org/10.3897/BDJ.8.e47255

 

Ronquist F., Forshage M., Häggqvist S., Karlsson D., Hovmöller R., et al. 2020. Completing Linnaeus’s inventory of the Swedish insect fauna: Only 5,000 species left?. PLOS ONE, https://doi.org/10.1371/journal.pone.0228561

 

Hugerth L. W. & Andersson A. F. 2017. Analysing Microbial Community Composition through Amplicon Sequencing: From Sampling to Hypothesis Testing. Frontiers in microbiology, https://doi.org/10.3389/fmicb.2017.01561

 

Abdelfattah A., Wisniewski M., Schena L. & Tack A. J. M. 2021. Experimental evidence of microbial inheritance in plants and transmission routes from seed to phyllosphere and root. Environmental Microbiology, https://doi.org/10.1111/1462-2920.15392

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Blanchet F. G., Roslin T., Kimura M. T., Kaartinen R., Gripenberg S. & Tack A. J. M. 2018. Related herbivore species show similar temporal dynamics. Journal of Animal Ecology, https://doi.org/10.1111/1365-2656.12807

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Ji Y., Huotari T., Roslin T., Schmidt N. M., Wang J. et al.  2020. SPIKEPIPE: A metagenomic pipeline for the accurate quantification of eukaryotic species occurrences and intraspecific abundance change using DNA barcodes or mitogenomes. Molecular Ecology Resources, https://doi.org/10.1111/1755-0998.13057

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Marquina D., Anderssson A. & Ronquist F. 2019. New mitochondrial primers for metabarcoding of insects, designed and evaluated using in silico methods. Molecular Ecology Resources, https://doi.org/10.1111/1755-0998.12942

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Roslin T. V., Traugott M., Jonsson M., Creer S. & Symondson, W. O. C. 2019. Special issue on species interactions, ecological networks and community dynamics: untangling the entangled bank using molecular techniques. Molecular Ecology, https://doi.org/10.1111/mec.14974