PUBLICATIONS

IBA PUBLICATIONS

Marquina D., Buczek M., Ronquist F., Łukasik P. 2021.The effect of ethanol concentration on the morphological and molecular preservation of insects for biodiversity studies. PeerJ, https://doi.org/10.7717/peerj.10799

Arribas, P., Andújar, C., Bidartondo, M.I., Bohmann, K., Coissac, É. et al. 2021. Connecting high‐throughput biodiversity inventories: Opportunities for a site‐based genomic framework for global integration and synthesis. Molecular Ecologyhttps://doi.org/10.1111/mec.15797 

PROTOCOLS DEVELOPED BY IBA

IBA has developed several lab protocols for processing bulk insect samples to use in metabarcoding. We make all our protocols publicly available through the links below.

OTHER RELEVANT PUBLICATIONS

Hartop E., Häggqvist S., Ulefors S.O. & Ronquist F. 2021. Scuttling towards monophyly: phylogeny of the mega‐diverse genus Megaselia (Diptera: Phoridae). Systematic Entomology, https://doi.org/10.1111/syen.12448

Karlsson D., Forshage M., Holston K. & Ronquist F. 2020. The data of the Swedish Malaise Trap Project, a countrywide inventory of Sweden's insect fauna. Biodiversity Data Journalhttps://doi.org/10.3897/BDJ.8.e56286


Karlsson D., Hartop E., Forshage M., Jaschhof M. & Ronquist F. 2020. The Swedish Malaise trap project: a 15 year retrospective on a countrywide insect inventory. Biodiversity Data Journal, https://doi.org/10.3897/BDJ.8.e47255


Ronquist F., Forshage M., Häggqvist S., Karlsson D., Hovmöller R., et al. 2020. Completing Linnaeus’s inventory of the Swedish insect fauna: Only 5,000 species left?. PLOS ONEhttps://doi.org/10.1371/journal.pone.0228561


Hugerth L. W. & Andersson A. F. 2017. Analysing Microbial Community Composition through Amplicon Sequencing: From Sampling to Hypothesis Testing. Frontiers in microbiology, https://doi.org/10.3389/fmicb.2017.01561

Alneberg J., Bennke C., Beier S., Bunse C., Quince C. et al. 2020. Ecosystem-wide metagenomic binning enables prediction of ecological niches from genomes. Communications Biology, https://doi.org/10.1038/s42003-020-0856-x


Abdelfattah A., Wisniewski M., Schena L. & Tack A. J. M. 2021. Experimental evidence of microbial inheritance in plants and transmission routes from seed to phyllosphere and root. Environmental Microbiology, https://doi.org/10.1111/1462-2920.15392


Zewdie B., Tack A. J. M., Ayalew B., Adugna G., Nemomissa S. et al. 2021. Temporal dynamics and biocontrol potential of a hyperparasite on coffee leaf rust across a landscape in Arabica coffee’s native range. Agriculture, Ecosystems and Environment, https://doi.org/10.1016/j.agee.2021.107297

van Dijk, L. J. A., Ehrlén J. & Tack, A. J. M. 2020. The timing and asymmetry of plant-pathogen-insect interactions. Proceedings of the Royal Society B, https://doi.org/10.1098/rspb.2020.1303

Abrego N., Roslin T., Huotari T., Tack A. J. M.,  Lindahl B. D. et al. 2020. Accounting for environmental variation in co-occurrence modeling reveals the importance of positive interactions in root-associated fungal communities. Molecular Ecology, https://doi.org/10.1111/mec.15516


Abrego N., Huotari T., Tack A. J. M., Lindahl B. D., Tikhonov G. et al. 2020. Higher host-plant specialization of root-associated endophytes than mycorrhizal fungi along an arctic elevational gradient. Ecology and Evolution, https://doi.org/10.1002/ece3.6604

Faticov M., Ekholm A., Roslin T. & Tack A. J. M. 2020. Climate and host genotype jointly shape tree phenology, disease levels and insect attacks. Oikos,  https://doi.org/10.1111/oik.06707


Rasmussen P. U., Bennett A. E. & Tack A. J. M. 2020. The impact of elevated temperature and drought on the ecology and evolution of plant-soil microbe interactions. Journal of Ecology, https://doi.org/10.1111/1365-2745.13292

Rasmussen P. U., Chareesri A., Neilson R., Bennett A. E.  & Tack A. J. M. 2019. The impact of dispersal, plant genotype and nematodes on arbuscular mycorrhizal fungal colonization. Soil Biology and Biochemistry, https://doi.org/10.1016/j.soilbio.2019.01.018

Desprez-Loustau M.-L., Massot M., Toïgo M., Fort T., Aday G. et al. 2018. From leaf to continent: the multi-scale distribution of an invasive cryptic pathogen complex on oak. Fungal Ecology, https://doi.org/10.1016/j.funeco.2018.08.001

Rasmussen P.U., Hugerth L., Andersson A., Lindahl B. & Tack A. J. M. 2018. Multi-scale patterns and drivers of AM fungal communities in the roots and root-associated soil of a wild perennial herb. New Phytologist, https://doi.org/10.1111/nph.15088


Blanchet F. G., Roslin T., Kimura M. T., Kaartinen R., Gripenberg S. & Tack A. J. M. 2018. Related herbivore species show similar temporal dynamics. Journal of Animal Ecology, https://doi.org/10.1111/1365-2656.12807


Eitzinger B., Roslin T., Vesterinen E., Robinson S. I. & O'Gorman E. J. 2021. Temperature affects both the Grinnellian and Eltonian dimensions of ecological niches– A tale of two Arctic wolf spiders. Basic and Applied Ecologyhttps://doi.org/10.1016/j.baae.2021.01.001

Kankaanpää T., Vesterinen E., Hardwick B. V. P., Schmidt N. M., Andersson T. et al. 2020. Parasitoids indicate major climate-induced shifts in arctic communities. Global Change Biology, https://doi.org/10.1111/gcb.15297

Ji Y., Huotari T., Roslin T., Schmidt N. M., Wang J. et al.  2020. SPIKEPIPE: A metagenomic pipeline for the accurate quantification of eukaryotic species occurrences and intraspecific abundance change using DNA barcodes or mitogenomes. Molecular Ecology Resources, https://doi.org/10.1111/1755-0998.13057

Antao L., Pöyry J., Leinonen R. & Roslin T. 2020. Contrasting latitudinal patterns in diversity and stability in a high-latitude species-rich moth community. Global Ecology and Biogeography, https://doi.org/10.1111/geb.13073

Marquina D., Anderssson A. Ronquist F. 2019. New mitochondrial primers for metabarcoding of insects, designed and evaluated using in silico methods. Molecular Ecology Resourceshttps://doi.org/10.1111/1755-0998.12942

Kaunisto K. M., Roslin T., Forbes M. R., Morrill A., Sääksjärvi I. E. et al.  2019. Threats from the air: damselfly predation on diverse prey taxa. Journal of Animal Ecologyhttps://doi.org/10.1111/1365-2656.13184

Tiusanen M., Huotari T., Hebert P. D. N., Andersson T., Asmus A. et al. 2019. Flower-visitor communities of an arcto-alpine plant– global patterns in species richness, phylogenetic diversity and ecological functioning. Molecular Ecology, https://doi.org/10.1111/mec.14932

Eitzingez B., Abrego N., Gravel D., Huotari T., Vesterinen E.J. et al.  2019. Assessing changes in arthropod predator-prey interactions through DNA-based gut content analysis – variable environment, stable diet. Molecular Ecology, https://doi.org/10.1111/mec.14872

Koskinen J., Roslin T., Nyman T., Abrego N., Michell C. et al. 2019. Finding flies in the mushroom soup: host specificity of fungus‐associated communities revisited with a novel molecular method. Molecular Ecology, https://doi.org/10.1111/mec.14810

Roslin T. V., Traugott M., Jonsson M., Creer S. & Symondson, W. O. C. 2019. Special issue on species interactions, ecological networks and community dynamics: untangling the entangled bank using molecular techniques. Molecular Ecologyhttps://doi.org/10.1111/mec.14974